| Protein ZmBAF60_7 | |
|---|---|
|
ZmBAF60_7 is a protein in the SWI/SNF-BAF60 family.
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| Information | |
| Coreg Name: | ZmBAF60_7 |
| Species: | Maize |
| Coreg Family: | SWI/SNF-BAF60 |
| Gene Name(Synonym): | |
| Uniprot ID: | B6TTM2 |
| Subgenome: | 2 |
Protein ZmBAF60_7
ZmBAF60_7 is a protein in the SWI/SNF-BAF60 family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF02201 | |
| Zm00001eb214330_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d013221 | DAPseq |  |
sequence | fimo | position |
| Zm00001d013221 | DAPseq |  |
sequence | fimo | position |
| Zm00001d013221 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d013221 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmBAF60_7 is the regulator
Interactions where ZmBAF60_7 is the target
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Zm00001eb214330_T001 from maize genome v5
Amino Acid Sequence
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MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF02201 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CACACTATTCCACAGACCCCATTGG...
CACACTATTCCACAGACCCCATTGGTCATCTCCAAAACCCCAAACCCTCGTTCAACATAGCCATTATCCGAAGTTCCGAACCCACGCCAAGCCCCAGGGTCCGACCGCAGAACCGACCCAAAATGTCGCCCGCCTCTTCCATGCTCACCGCCGTGTCGCTCTCCTCCCCGCTCCCAGCCCCGCGCCTCCGCGCCGCCGCCGCCGCCTCCTCCTTCGCTCCGCCGCGCCGCGCGGCAGTCGCACTCGTCGTGCGCGCGGCGTCCGCATCTTCCAAGTCCCCTGCCACGGCGGAGGCGGCCCCGAAGAAGAAGAGGGCGACCGGCATCACCCAGCCGAAGTCCGTGTCGCCGGCGCTGCAGGCAATCGTGGGCGACCCGGTTATTCCCCGCACCGAGGTCCTCAAGCGCCTCTGGGCCTATATCAAGGAGCATAACCTCCAGGATCCCTCTGATAAAAAGGTGGTGGTTTGTGATGAGAAGCTGAAGGTCCTGTTCGCGGGGCGGGAGCGAGTGGGATTCCTTGAGATCGCCAAGCTTCTCAACCCTCACTTCGTGAAGTGATGAGGAGGAGCCAGGCCACTTCCAGGAATCGAGTTAGCTTATATGGTTGGTTGGTTACTTGTGGCTGGCCTAGAGGGTGCGCGTGCGTTGGGTTTTGGTAGCCTGAGTTGGCTCGCTCGACTTTGTAGAATGCTGTTGTTAGCTTTTATTAGTAGCCTTCAGCTCGTAGCCTGGTATGCAGTTAGCGTGTGTGGTGTTCTGCTATGGTTTAAGTTTAACCACTGTCCATAGTCAGTCAATGTTAGCTTCCTTGTCCTTGCAATGGATGTTGCTGTGTGAATTATGGTCCAACATGGATTGGTTGCTCTGCTATGGTTTAGTCACTGCCCAGTCAGTCTATATATATTTTTTGATGGTAACAGTCAGTCT
GRMZM2G077088_T01 from maize genome v3
Amino Acid Sequence
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MVGWLLVAGLEGARALGFGSLSWLARLCRMLLLAFISSLQLVAWYAVSVCGVLLWFKFNHCP
Nucleotide Sequence
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CCTGGTACCTTCCTTGTCTAACCAC...
CCTGGTACCTTCCTTGTCTAACCACTTTGGCCCCCCCTGCTTTCAGGATCCCTCTGATAAAAAGGTGGTGGTTTGTGATGAGAAGCTGAAGGTCCTGTTCGCGGGGCGGGAGCGAGTGGGATTCCTTGAGATCGCCAAGCTTCTCAACCCTCACTTCGTGAAGTGATGAGGAGGAGCCAGGCCACTTCCAGGAATCGAGTTAGCTTATATGGTTGGTTGGTTACTTGTGGCTGGCCTAGAGGGTGCGCGTGCGTTGGGTTTTGGTAGCCTGAGTTGGCTCGCTCGACTTTGTAGAATGCTGTTGTTAGCTTTTATTAGTAGCCTTCAGCTCGTAGCCTGGTATGCAGTTAGCGTGTGTGGTGTTCTGCTATGGTTTAAGTTTAACCACTGTCCATAGTCAGTCAATGTTAGCTTCCTTGTCCTTGCAATGGATGTTGCTGTGTGAATTATGGTCCAACATGGATTGGTTGCTCTGCTATGGTTTAGTCACTGCCCAGTCAGTCTATATATATTTTTTGATGGTAACAGTCAGTCTATATA
GRMZM2G077088_T02 from maize genome v3
Amino Acid Sequence
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MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
Nucleotide Sequence
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CATTGGTCATCTCCAAAACCCCAAA...
CATTGGTCATCTCCAAAACCCCAAACCCTCGTTCAACATAGCCATTATCCGAAGTTCCGAACCCACGCCAAGCCCCAGGGTCCGACCGCAGAACCGACCCAAAATGTCGCCCGCCTCTTCCATGCTCACCGCCGTGTCGCTCTCCTCCCCGCTCCCAGCCCCGCGCCTCCGCGCCGCCGCCGCCGCCTCCTCCTTCGCTCCGCCGCGCCGCGCGGCAGTCGCACTCGTCGTGCGCGCGGCGTCCGCATCTTCCAAGTCCCCTGCCACGGCGGAGGCGGCCCCGAAGAAGAAGAGGGCGACCGGCATCACCCAGCCGAAGTCCGTGTCGCCGGCGCTGCAGGCAATCGTGGGCGACCCGGTTATTCCCCGCACCGAGGTCCTCAAGCGCCTCTGGGCCTATATCAAGGAGCATAACCTCCAGGATCCCTCTGATAAAAAGGTGGTGGTTTGTGATGAGAAGCTGAAGGTCCTGTTCGCGGGGCGGGAGCGAGTGGGATTCCTTGAGATCGCCAAGCTTCTCAACCCTCACTTCGTGAAGTGATGAGGAGGAGCCAGGCCACTTCCAGGAATCGAGTTAGCTTATATGGTTGGTTGGTTACTTGTGGCTGGCCTAGAGGGTGCGCGTGCGTTGGGTTTTGGTAGCCTGAGTTGGCTCGCTCGACTTTGTAGAATGCTGTTGTTAGCTTTTATTAGTAGCCTTCAGCTCGTAGCCTGGTATGCAGTTAGCGTGTGTGGTGTTCTGCTATGGTTTAAGTTTAACCACTGTCCATAGTCAGTCAATGTTAGCTTCCTTGTCCTTGCAATGGATGTTGCTGTGTGAATTATGGTCCAACATGGATTGGTTGCTCTGCTATGGTTTAGTCACTGCCCAGTCAGTCTATATATATTTTTTGATGGTAACA
Zm00001d013221_T001 from maize genome v4
Amino Acid Sequence
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MSPASSMLTAVSLSSPLPAPRLRAAAAASSFAPPRRAAVALVVRAASASSKSPATAEAAPKKKRATGITQPKSVSPALQA
IVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRERVGFLEIAKLLNPHFVK
Nucleotide Sequence
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ATTGGTCATCTCCAAAACCCCAAAC...
ATTGGTCATCTCCAAAACCCCAAACCCTCGTTCAACATAGCCATTATCCGAAGTTCCGAACCCACGCCAAGCCCCAGGGTCCGACCGCAGAACCGACCCAAAATGTCGCCCGCCTCTTCCATGCTCACCGCCGTGTCGCTCTCCTCCCCGCTCCCAGCCCCGCGCCTCCGCGCCGCCGCCGCCGCCTCCTCCTTCGCTCCGCCGCGCCGCGCGGCAGTCGCACTCGTCGTGCGCGCGGCGTCCGCATCTTCCAAGTCCCCTGCCACGGCGGAGGCGGCCCCGAAGAAGAAGAGGGCGACCGGCATCACCCAGCCGAAGTCCGTGTCGCCGGCGCTGCAGGCAATCGTGGGCGACCCGGTTATTCCCCGCACCGAGGTCCTCAAGCGCCTCTGGGCCTATATCAAGGAGCATAACCTCCAGGATCCCTCTGATAAAAAGGTGGTGGTTTGTGATGAGAAGCTGAAGGTCCTGTTCGCGGGGCGGGAGCGAGTGGGATTCCTTGAGATCGCCAAGCTTCTCAACCCTCACTTCGTGAAGTGATGAGGAGGAGCCAGGCCACTTCCAGGAATCGAGTTAGCTTATATGGTTGGTTGGTTACTTGTGGCTGGCCTAGAGGGTGCGCGTGCGTTGGGTTTTGGTAGCCTGAGTTGGCTCGCTCGACTTTGTAGAATGCTGTTGTTAGCTTTTATTAGTAGCCTTCAGCTCGTAGCCTGGTATGCAGTTAGCGTGTGTGGTGTTCTGCTATGGTTTAAGTTTAACCACTGTCCATAGTCAGTCAATGTTAGCTTCCTTGTCCTTGCAATGGATGTTGCTGTGTGAATTATGGTCCAACATGGATTGGTTGCTCTGCTATGGTTTAGTCACTGCCCAGTCAGTCTATATATATTTTTTGATGGTAACA
Zm00001d013221_T002 from maize genome v4
Amino Acid Sequence
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YPKFRTHAKPQGPTAEPTGITQPKSVSPALQAIVGDPVIPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFAGRE
RVGFLEIAKLLNPHFVK
Nucleotide Sequence
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ATTATCCGAAGTTCCGAACCCACGC...
ATTATCCGAAGTTCCGAACCCACGCCAAGCCCCAGGGTCCGACCGCAGAACCGACCGGCATCACCCAGCCGAAGTCCGTGTCGCCGGCGCTGCAGGCAATCGTGGGCGACCCGGTTATTCCCCGCACCGAGGTCCTCAAGCGCCTCTGGGCCTATATCAAGGAGCATAACCTCCAGGATCCCTCTGATAAAAAGGTGGTGGTTTGTGATGAGAAGCTGAAGGTCCTGTTCGCGGGGCGGGAGCGAGTGGGATTCCTTGAGATCGCCAAGCTTCTCAACCCTCACTTCGTGAAGTGATGAGGAGGAGCCAGGCCACTTCCAGGAATCGAGTTAGCTTATATGGTTGGTTGGTTACTTGTGGCTGGCCTAGAGGGTGCGCGTGCGTTGGGTTTTGGTAGCCTGAGTTGGCTCGCTCGACTTTGTAGAATGCTGTTGTTAGCTTTTATTAGTAGCCTTCAGCTCGTAGCCTGGTATGCAGTTAGCGTGTGTGGTGTTCTGCTATGGTTTAAGTTTAACCACTGTCCATAGTCAGTCAATGTTAGCTTCCTTGTCCTTGCAATGGATGTTGCTGTGTGAATTATGGTCCAACATGGATTGGTTGCTCTGCTATGGTTTAGTCACTGCCCAGTCAGTCTATATATATTTTTTGAT
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